Knockout phase
From the last 16 until the semi-finals, clubs play two matches against each other on a home-and-away basis with the same rules as the qualifying and play-off rounds applied. In the last 16, group winners play runners-up other than teams from their own pool or nation, while from the quarter-finals on the draw is free.
| Round of 16, 1st leg | 14-15/02/12 & 21-22/02/12 |
| Round of 16, 2nd leg | 06-07/03/12 & 13-14/03/12 |
| Quarter-finals, 1st leg | 27-28/03/12 |
| Quarter-finals, 2nd leg | 03-04/04/12 |
| Semi-finals, 1st leg | 17-18/04/12 |
| Semi-finals, 2nd leg | 24-25/04/12 |
| Final (Fußball Arena München) | 19/05/12 |
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